Pumpkin cream cheese muffins are a delightful treat that combines the warm flavors of pumpkin spice with a rich cream cheese swirl. Perfect for breakfast, snacks, or any fall gathering, these muffins offer a unique twist on traditional baked goods. Their light and fluffy texture, paired with the creamy cheesecake filling, makes them irresistible!
Why You’ll Love This Recipe
- Easy to Make: With simple ingredients and straightforward steps, you’ll have these muffins ready in no time.
- Delicious Flavor: The combination of pumpkin puree and pumpkin pie spice creates a warm, comforting flavor that’s perfect for autumn.
- Perfectly Moist: Thanks to the cream cheese filling, each muffin stays moist and tender, making every bite enjoyable.
- Versatile Occasion: Ideal for breakfast, brunch, or even dessert, these muffins are great for any occasion.
- Batch Cooking: You can easily double the recipe to share with friends or save some for later.

Tools and Preparation
Before you start baking your pumpkin cream cheese muffins, gather your tools and prepare your kitchen.
Essential Tools and Equipment
- Muffin pans
- Mixing bowls
- Electric hand mixer
- Measuring cups
- Measuring spoons
- Whisk
Importance of Each Tool
- Muffin pans: These allow you to create perfectly shaped muffins. Using paper liners also makes cleanup easy!
- Electric hand mixer: This tool helps you mix the cream cheese filling smoothly without any lumps.
- Measuring cups/spoons: Accurate measurements are crucial in baking for consistency and flavor.
Ingredients
Pumpkin cream cheese muffins are light, fluffy, and moist, full of pumpkin spice flavor, and swirled with creamy cheesecake.
For the Muffins
- ½ cup oil (canola/vegetable)
- 1 cup granulated sugar
- 1 tsp vanilla extract
- 1 ¼ cups pumpkin puree
- 2 large eggs
- ½ cup milk
- 1 ¾ cups all-purpose flour (stir, spoon, & level)
- 1 tsp baking soda
- ½ tsp baking powder
- ½ tsp salt
- 4 tsp pumpkin pie spice
For the Cream Cheese Filling
- 8 oz block cream cheese
- ¼ cup granulated sugar
- 1 large egg
- 1 tsp vanilla extract
How to Make Pumpkin Cream Cheese Muffins
Step 1: Preheat the Oven
Preheat your oven to 375 degrees Fahrenheit. This ensures that your muffins bake evenly.
Step 2: Mix Wet Ingredients
In a large bowl:
1. Whisk together the oil, sugar, and vanilla until well combined.
2. Add the pumpkin puree, eggs, and milk. Continue whisking until everything is fully integrated.
Step 3: Combine Dry Ingredients
In a separate bowl:
1. Combine the flour, baking soda, baking powder, salt, and pumpkin pie spice.
2. Gradually mix this dry mixture into the wet ingredients until just combined. Set aside.
Step 4: Prepare Cream Cheese Filling
In another bowl:
1. Beat the cream cheese and granulated sugar together using an electric hand mixer until smooth.
2. Add the egg and vanilla extract; mix well while scraping down the sides of the bowl as needed.
Step 5: Fill Muffin Pans
Line your muffin pans with paper liners:
1. Scoop about 2/3 full of pumpkin muffin batter into each cup using a #24 scoop.
2. Spoon approximately one Tablespoon of cream cheese filling over each muffin.
Step 6: Swirl Batters Together
To create a marbled effect:
1. Use a knife to gently fold (not just swirl) the two batters together by inserting it through the center of the muffin batter.
2. Carefully scrape along the bottom and fold back towards the center; repeat this process 2-3 times for marbling.
Step 7: Bake
Bake at 375˚F for 15-18 minutes or until a toothpick inserted in the center comes out with just a few moist crumbs attached. Be careful not to over-bake! Once done, let them cool completely before serving.
How to Serve Pumpkin Cream Cheese Muffins
Pumpkin cream cheese muffins are delicious on their own and can be paired with various items to enhance your breakfast or snack experience. Here are some serving suggestions to enjoy these delightful muffins.
With a Hot Beverage
- Coffee – A warm cup of coffee perfectly complements the pumpkin spice flavor in the muffins.
- Tea – Herbal teas, especially chai, bring out the cozy fall vibes when enjoyed alongside these muffins.
- Hot Chocolate – For a sweeter pairing, hot chocolate adds a rich chocolatey flavor that contrasts beautifully.
Spreadable Toppings
- Cream Cheese Frosting – Spread a little extra cream cheese frosting for an indulgent touch.
- Butter – A pat of butter adds richness and enhances the moistness of the muffin.
- Maple Syrup – Drizzle maple syrup over the top for an added layer of sweetness.
Fruit Pairings
- Fresh Berries – Strawberries or blueberries offer a fresh contrast to the richness of the muffins.
- Sliced Bananas – Bananas add creaminess and a natural sweetness that works well with pumpkin flavors.
How to Perfect Pumpkin Cream Cheese Muffins
To ensure your pumpkin cream cheese muffins turn out delicious every time, consider these helpful tips.
- Use Fresh Ingredients – Ensure your baking powder and spices are fresh for maximum flavor and rise.
- Don’t Overmix – Mix just until combined; overmixing can lead to tough muffins instead of light and fluffy ones.
- Room Temperature Ingredients – Bring eggs and cream cheese to room temperature for easier mixing and better texture.
- Check for Doneness Early – Start checking your muffins at 15 minutes to avoid over-baking them.
- Cool Completely Before Storing – Let them cool before storing to prevent sogginess from trapped steam.
Best Side Dishes for Pumpkin Cream Cheese Muffins
Pairing side dishes with your pumpkin cream cheese muffins can elevate any meal. Here are some great options to consider.
- Scrambled Eggs – Fluffy scrambled eggs provide protein and balance out the sweetness of the muffins.
- Yogurt Parfait – Layer yogurt with granola and fruit for a refreshing contrast that complements the muffin’s richness.
- Oatmeal – A warm bowl of oatmeal topped with nuts or dried fruits offers a hearty addition to your breakfast table.
- Fruit Salad – A mix of seasonal fruits brightens up the plate and adds freshness alongside muffins.
- Smoothie Bowl – A smoothie bowl packed with spinach, banana, and almond milk is nutritious and pairs well with sweet treats.
- Chia Seed Pudding – This creamy pudding provides healthy fats and fiber, making it a great complement to baked goods.
Common Mistakes to Avoid
Making pumpkin cream cheese muffins can be a delightful experience, but some common mistakes can lead to less-than-perfect results. Here are some pitfalls to watch out for:
- Using too much flour: Measuring flour incorrectly can make your muffins dense. Always stir, spoon, and level your flour for accurate measurement.
- Overmixing the batter: Overmixing can result in tough muffins. Mix just until combined for light and fluffy texture.
- Skipping the folding step: Not properly folding the cream cheese mixture into the muffin batter can lead to uneven distribution. Be gentle and ensure a nice swirl without overdoing it.
- Not preheating the oven: Baking in an unheated oven can affect rising and texture. Always preheat your oven before baking.
- Ignoring baking time: Overbaking can dry out your muffins. Check them a few minutes early with a toothpick to avoid this.

Storage & Reheating Instructions
Refrigerator Storage
- Store pumpkin cream cheese muffins in an airtight container in the fridge.
- They will stay fresh for up to 5 days.
Freezing Pumpkin Cream Cheese Muffins
- Wrap each muffin tightly in plastic wrap or aluminum foil.
- Store them in a freezer-safe bag or container for up to 3 months.
Reheating Pumpkin Cream Cheese Muffins
- Oven: Preheat to 350°F and heat muffins for about 10 minutes until warm.
- Microwave: Heat individual muffins for about 15-20 seconds on high power.
- Stovetop: Use a skillet over low heat, cover, and warm muffins for about 5 minutes.
Frequently Asked Questions
What makes pumpkin cream cheese muffins so special?
Pumpkin cream cheese muffins are special because they combine the rich flavors of pumpkin spice with a creamy cheesecake filling, creating a deliciously moist treat.
Can I substitute ingredients in pumpkin cream cheese muffins?
Yes, you can substitute oil with applesauce for a healthier option or use almond milk instead of regular milk if you’re lactose intolerant.
How do I adjust the recipe for mini muffins?
To make mini pumpkin cream cheese muffins, reduce baking time to about 10-12 minutes while keeping the same temperature.
Are pumpkin cream cheese muffins healthy?
While they do contain sugar and fat, these muffins can be made healthier by using whole wheat flour or reducing sugar levels.
How do I store leftover muffins?
Store leftover pumpkin cream cheese muffins in an airtight container at room temperature for up to two days or refrigerate them for extended freshness.
Final Thoughts
Pumpkin cream cheese muffins are a perfect blend of flavors that brings warmth and comfort with each bite. They are not only delightful as breakfast but also versatile enough for snacks or dessert. Feel free to customize them by adding nuts or chocolate chips!

Pumpkin Cream Cheese Muffins
- Total Time: 33 minutes
- Yield: About 12 servings 1x
Description
Pumpkin Cream Cheese Muffins are the ultimate fall treat, blending the cozy flavors of pumpkin spice with a rich cream cheese swirl. Perfect for breakfast, snacks, or any autumn gathering, these muffins are light and fluffy, making each bite irresistible. The addition of creamy cheesecake filling ensures every muffin remains moist and tender. Easy to make with simple ingredients, these muffins are not only delicious but also versatile enough to suit any occasion. Whether enjoyed with coffee in the morning or as a sweet treat in the afternoon, Pumpkin Cream Cheese Muffins will surely become a seasonal favorite.
Ingredients
- ½ cup oil (canola/vegetable)
- 1 cup granulated sugar
- 1 tsp vanilla extract
- 1 ¼ cups pumpkin puree
- 2 large eggs
- ½ cup milk
- 1 ¾ cups all-purpose flour
- 1 tsp baking soda
- ½ tsp baking powder
- ½ tsp salt
- 4 tsp pumpkin pie spice
- 8 oz cream cheese
- ¼ cup granulated sugar
- 1 large egg
- 1 tsp vanilla extract
Instructions
- Preheat your oven to 375°F and line muffin pans with paper liners.
- In a large bowl, whisk together oil, sugar, and vanilla. Add pumpkin puree, eggs, and milk; mix until smooth.
- In another bowl, combine flour, baking soda, baking powder, salt, and pumpkin pie spice. Gradually add dry ingredients to wet ingredients; mix until just combined.
- For the cream cheese filling: beat cream cheese and sugar until smooth; add egg and vanilla extract.
- Fill muffin cups about two-thirds full with batter. Spoon cream cheese filling on top and gently swirl with a knife.
- Bake for 15-18 minutes or until a toothpick comes out clean.
- Prep Time: 15 minutes
- Cook Time: 18 minutes
- Category: Breakfast
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin (85g)
- Calories: 220
- Sugar: 14g
- Sodium: 220mg
- Fat: 10g
- Saturated Fat: 3g
- Unsaturated Fat: 7g
- Trans Fat: 0g
- Carbohydrates: 30g
- Fiber: 1g
- Protein: 3g
- Cholesterol: 35mg